PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10001631m
Common NameCICLE_v10000881mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family B3
Protein Properties Length: 359aa    MW: 40161.7 Da    PI: 8.2829
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10001631mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3451.9e-14175269198
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                      f+ ++++ +v+ s  l +p +f  +h   ++ +++++l +++g sW+v+    +k   ++++ +GW  Fv+ n++k gD+++F+l+++ e  l+
  Ciclev10001631m 175 FVRKMKRFNVSGSYTLNIPYQFSMAHL--PNFKTEVVLHNLKGASWTVNSVPtTKVHTSHTFCGGWLAFVRGNEIKLGDICIFELVHKCE--LH 264
                      667777788899999*******99994..346679**************95557777779999*********************998444..59 PP

                      EEEE- CS
               B3  94 vkvfr 98 
                      v ++r
  Ciclev10001631m 265 VYILR 269
                      99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.647169IPR003340B3 DNA binding domain
CDDcd100174.53E-10167No hitNo description
Gene3DG3DSA:2.40.330.101.8E-13571IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.12E-14671IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.4E-21170269IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.89E-23172270IPR015300DNA-binding pseudobarrel domain
CDDcd100172.06E-19173269No hitNo description
SMARTSM010198.0E-12175271IPR003340B3 DNA binding domain
PfamPF023629.4E-12175269IPR003340B3 DNA binding domain
PROSITE profilePS5086312.802175271IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MEGRTSGSVT LIGPSWDTWH IDLIQQDDNL FFDKGWPVFL RDNFIECGDL LVFRYDGELH  60
FTVQIFDQSG CEKEAAFNSK STSTGQKRER EEAVAHSDKA LQSLLKKIRE CSSSFESDCI  120
DDNRDREADS CEETRRCLSL STIFASPSQP KTCNIKPEDE EKKVAQSFIS AFPYFVRKMK  180
RFNVSGSYTL NIPYQFSMAH LPNFKTEVVL HNLKGASWTV NSVPTTKVHT SHTFCGGWLA  240
FVRGNEIKLG DICIFELVHK CELHVYILRV GKQYPDSQRG TTVLTGSNVS STTISCKQFD  300
GVPKKVKKNS LKKIQLCNVK GSKSCEIKKH IGTDGNSVSI ATCCLPKISH EKSGKAVN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006434875.10.0hypothetical protein CICLE_v10000881mg
RefseqXP_006434876.10.0hypothetical protein CICLE_v10000881mg
TrEMBLV4T9C40.0V4T9C4_9R
STRINGVIT_18s0001g11360.t011e-116(Vitis vinifera)
STRINGPOPTR_0014s03610.11e-115(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.11e-16B3 family protein